Showing posts with label Lessons. Show all posts
Showing posts with label Lessons. Show all posts

Kohler Illumination in Light Microscopy


Köhler illumination is a method of specimen illumination used for transmitted and reflected light (trans- and epi-illuminated) optical microscopy. Köhler illumination acts to generate an extremely even illumination of the sample and ensures that an image of the illumination source (for example a halogen lamp filament) is not visible in the resulting image. Köhler illumination is the predominant technique for sample illumination in modern scientific light microscopy although it requires additional optics which less expensive and simpler light microscopes may not have.

The primary advantage of Köhler illumination is the extremely even illumination of the sample. This reduces image artifacts and provides high sample contrast. Even illumination of the sample is also critical for advanced illumination techniques such as phase contrast and differential interference contrast microscopy.

By adjustment of the field diaphragm the amount of light entering the sample can be freely adjusted without altering the wavelengths of light present, in contrast to reducing power to the light source with critical illumination. Adjusting the condenser diaphragm alters sample contrast. Furthermore altering the size of the condenser diaphragm allows adjustment of sample depth of field by altering the effective numerical aperture of the microscope. The role of the condenser diaphragm is analogous to the aperture in photography although the condenser diaphragm of a microscope functions by controlling illumination of the specimen, while the aperture of a camera functions by controlling illumination of the detector.

Check out the Köhler illumination setup instructions at this link: http://microscopy.berkeley.edu/courses/TLM/condenser/kohler.html

(From Wikipedia, the free encyclopedia. Text is available under the Creative Commons Attribution-ShareAlike License)

Taking Photomicrographs Using My Sony Cyber-shot Digital Camera

If you want to take some photographs and videos of microscopic features you are examining under a microscope lens, a simple digital camera is all you need.  No need to have very expensive special equipment to capture beautiful images.

As a malaria microscopy validator I need to record still photos of my findings to be included in the report. I have done these simple steps and techniques in the validation of microscopy results from in vivo therapeutic studies of antimalarial drugs.

JoPas in action


Below is the list of materials and equipment you will need:
  1. A compound microscope
  2. Digital Camera
  3. Specimen in a glass slide
  4. 2 stable chairs with backrest
In order to capture a clear photomicrograph shot, the position and level of your digicam must be stable. You can use two chairs with backrest in order for you to have a good control in positioning the digicam. Rest your hands on top of the backrest as seen in the figure below.




Once the specimen is in focus under the microscope, level your digicam lens to the light coming out from one of the eyepiece.  You must be aware of the microscope's eye point or point of focus so that it would be easier to get the distance the camera must be from the eyepiece.  You can check this out by holding a piece of blank paper above the eyepiece.  You will see a light or image projection on the paper.  Move the paper closer or farther from the eyepiece until it is in focus.  That distance is the microscope's eye point.

light projection shown is not yet in exact focus

the exact microscope's eye point showing a clear light projection

Once you see the light or image projection on the display or screen of the camera, lower the digicam slowly until reaching the focal point.  Be sure to keep the position of the image projection at the center of the display as you lower the camera. You will notice that the diameter of the image projection is increasing until the whole field of view is in focus.

 
 
 
 



From there use the zoom function of the camera until the image fills the entire camera's display.  Once adjusted, click the shutter slowly.  You can reduce blurring by setting the self-timer to [2sec] and turning off the flash.  Press the shutter button and hold the camera steadily.  It takes a little practice to hold the camera steady, so take enough shots to make sure you have good ones with the right lighting and focus.




There you have it.  You can now transfer the images into your computer and edit them to your desired appearance.

Preparation of Giemsa Working Solution and Staining of Malaria Blood Films

The use of Giemsa stain is the most reliable procedure to stain malaria blood film, which is composed of eosin and methylene blue. The eosin component stains the parasite nucleus red, while the methylene component stains the cytoplasm blue. Proper preparation of Giemsa staining of high quality standardized malaria blood thick and thin films on the glass slides to be used in microscopy centers must be observed.

a.  Ensure that the following materials, reagents and supplies are available for proper preparation of stain:
  • Giemsa Stock solution 
  • Buffered water (ph 7.2) 
  • Methanol 
  • Pasteur pipettes 
  • Graduated cylinder 
  • Drying Rack 
  • Staining trough 
  • Clean tap water 
  • Timing clock
b. There are two methods of staining with Giemsa stains: (i) the Rapid (10%) method, and (ii) routine or regular (3%) method;

     b.1.1 Preparation of 10% Giemsa working solution( mass staining)
i. Pour 90 mL of buffered water (ph 7.2) into a 100 mL graduated cylinder;
ii. Using a pasteur pipette, draw 10 mL of Giemsa stock solution. Add the stain to the buffered water in the graduated cylinder;
iii. Cover the top of the graduated cylinder with parafilm. Gently invert the cylinder several times until completely mixed;
iv. Giemsa working solution stain must be discarded through the sink after 24 hours and prepare a fresh working solution again.
     b.1.2 Preparation of 10% Giemsa working solution (individual slide staining)
i. For individual slide staining, each slide needs approximately 3 mL of Giemsa working solution to cover it;
ii. Using a Pasteur pipette add 9 drops of Giemsa stock solution to 3ml of buffered water in a 10 mL graduated cylinder.
     b.1.3 Procedure of Rapid staining of Malaria blood films
i. Allow thick film to dry completely. If rapid results are required, drying maybe hastened by using a blow drier or briefly exposing the slide to gentle heat such as from the microscope lamp. Care should be taken to avoid overheating, otherwise the thick film will be heat-fixed;
ii. Fix the thin film by dipping it briefly in a container with methanol for a few seconds. To permit dehemoglobinization, the thick film should not be fixed; thus avoid methanol or its fumes touch the thick film;
iii. Gently pour the stain on the slide using a pipette on the staining assembly. Alternatively, slides can be placed faced down on a concave staining plate and the stain introduced underneath the slide; (not routinely practice);
iv. Staining Time: It depends on the age of the Giemsa stock solution. It may extend up to 15 minutes if Giemsa stock is freshly prepared;
v. Gently flush the stain off the slide with a clean tap water; do not tip off the stain on the slide and wash, as this will leave a deposit of scum over the smear;
vi. Place the slide on the drying rack, film side downwards, to drain and dry making sure that the film does not touch the edge of the rack.
     b.2 Regular Staining Method (3% Giemsa stain working solution)
This regular method is used for staining larger number of slides such as those collected during surveys or research studies.
b.2.1 Preparation of 3% Giemsa working solution
     i. Pour 97 mL of buffered water (ph 7.2) into a 100 mL graduated cylinder;
     ii. Using Pasteur pipette, draw 3 mL of Giemsa stain. Add the stain to the buffered water in the graduated cylinder;
     iii. Cover the top of the graduated cylinder with parafilm or gently invert the cylinder several times until completely mixed;
     iv. Label the cylinder with contents, date and time prepared and technician’s initial;
     v. Buffered Giemsa stain must be prepared fresh and discarded after 6 hours.
b.2.2 Procedure of Regular Staining of Malaria Blood Film
     i. Fix thin film by briefly dipping it in a container with methanol for a few seconds. Prolong fixation make it   difficult to demonstrate Schuffner’s dots and Maurer’s spots. To permit dehaemoglobinization, the thick film should not be fixed, therefore avoid methanol or its vapor touching the film.
     ii. Place malaria blood film in a staining rack and stain singly, or in batches in staining jar to avoid cross-contamination. Batch staining is advisable only when several malaria blood films are from a single patient.
     iii. Stain films for 30-45 minutes out of the sunlight.
     iv. Pour clean tap water gently into the trough to float off the iridescent scum on the surface of the stain. Alternatively, gently immerse the whole trough in a vessel filled with clean tap water.
     v. Rinse slides briefly and gently under running tap water or by a gentle flow of clean water from a beaker.
     vi. Place the stained slides in a drying rack to drain and dry, film side downwards, making sure the film does not touch the slide rack.
     vii. At all times during preparation and storage, slides should be protected from exposure to dust and insects.
c. Evaluation of Stained Blood Film
  
     c.1 Evaluation of a well-stained blood thin film:
i. The background should be clean and free from debris; the color of erythrocyte is a pale grayish pink;
ii. Leukocytes have deep purple nuclei and well defined granules;
iii. The chromatin of malaria parasite is a deep purplish red and clear purplish blue cytoplasm;
iv. Stippling should show up as schuffner’s dots in erythrocytes containing P. vivax or P. ovale, and Maurer’s spots in erythrocytes containing the larger ring forms of P. falciparum.
     c.2 Evaluation of a well-stained thick film:
i. The background should be clean and free from debris, with a pale mottled-grey color derived from the lysed erythrocytes;
ii. Leukocytes nuclei are a deep-rich purple;
iii. Malaria parasites are well defined with deep-red chromatin pale purplish blue cytoplasm. In P. vivax and P. ovale infections, the presence of schuffner’s stippling in the “ghost” of host erythrocytes can be seen especially at the edge of the film.
     c.3 Staining quality:
i. A malaria blood film that is too pinkish suggests low ph or overstraining;
ii. A malaria blood film that is too bluish or purplish suggests high ph, film is too thick or under-stained.
Source:  Department of Health - Malaria Control Program Manual of Procedures, Guidelines in the Diagnosis and Treatment of Malaria

Joseph DeRisi (UCSF) Part 3: Malaria: Drug Development

Joseph DeRisi (UCSF) Part 2: Malaria: Research

Joseph DeRisi (UCSF) Part 1: Malaria: The disease and parasites

This brief set of three lectures gives a very general overview of malaria, the disease and Plasmodium falciparum, the causative agent of the most deadly form. Basic research as well as drug development efforts will also be covered in parts two and three of this series. See more at http://www.ibioseminars.org

Preparation of a Blood Smear for Malaria Microscopy

There are two kinds of blood film that are being used in malaria microscopy, the thick film which is always used to search for malaria parasites and the thin film for the confirmation of species.

The thick film consists of several layers of red and white blood cells of about 10 to 20 times that of a thin film.  The hemoglobin in the red blood cells are dissolved during staining, thus a large amount of blood can be examined quickly and easily.  It is in this film also where parasites are counted when present.

A well prepared thin film consists of a single layer of red and white blood cells that is spread over half the slide.  The film is fixed with methanol before staining to preserve the morphological characteristics of the cells making specie identification easier when cannot be done in the thick film.


Blood Smear Preparation for Malaria Microscopy

Malaria Microscopy Quality Assurance

An overview of the Malaria Microscopy Quality Assurance in the Philippines based from the Department of Heath - Malaria Control Program Manual of Procedures.

Presentation prepared by Jocelyn Rosete Pascua

An Overview of the Malaria Microscopy Quality Assurance in the Philippines -

An Overview of Diagnostic Methods in Malaria


An Overview of Diagnostic Methods in Malaria -

Care and Maintenance of a Microscope

The Microscope                                                              

How to Read Vernier Scales

By Jeffrey V. de Guzman


How to Use a Vernier Scale -

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